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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:10:13, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Electrona antarctica genome assembly, chromosome: 24.
OX578269.1:31846396-31846414
ACCCAAGCGGTGCCACGGCAACAAAGCCTC31846396CGTGTCAAAGAATCTCATCGAGGGAGAGACACTATGCTGGAACCCCAAA
BNZB_UP_200_E07_14MAR2006_055 Brassica napus BNZB Brassica napus cDNA 5', mRNA sequence.
ES968198.1:303-321
GCTCGTCTGACAAAACCCACCAAAGTAAAC303CGTGTCAAAGAATCTCATCTGGATCCCAATCTCTGAGACTATAGCCTCG
0120828 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV115516.1:271-289
GCTCGTCTGACAAAACCCACCAAAGTAAAC271CGTGTCAAAGAATCTCATCTGGATCCCAATCTCTGAGACTATAGCCTCG
0120834 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV115522.1:260-278
GCTCGTCTGACAAAACCCACCAAAGTAAAC260CGTGTCAAAGAATCTCATCTGGATCCCAATCTCTGAGACTATAGCCTCG
RR1E806JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
EY896115.1:262-280
GCTCGTCTGACAAAACCCACCAAAATAAAC262CGTGTCAAAGAATCTCATCTGGATTCCAATCTCTGAGACTATAGCCTTA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH039L17, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces.
AC241126.1:7391-7409
GCTCGTCTGACAAAACCCACCAAAGTAAAC7391CGTGTCAAAGAATCTCATCTGGATCCCAATCTCTGAGACTATAGCCTCG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrE041C10, complete sequence.
AC241087.1:37138-37156
GCTCGTCTGACAAAACCCACCAAAGTAAAC37138CGTGTCAAAGAATCTCATCTGGATCCCAATCTCTGAGACTATAGCCTCG
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:7177832-7177850
GCTCGTCTGACAAAACCCACCAAAGTAAAC7177832CGTGTCAAAGAATCTCATCTGGATCCCAATCTCTGAGACTATAGCCTCG
Raphanus sativus genome assembly, chromosome: 4.
OY743210.1:5664187-5664205
GCTCGTCTGACAAAACCCACCAAAATAAAC5664187CGTGTCAAAGAATCTCATCTGGATTCCAATCGCTGAGACTATAGCCTCA
Hymenolepis microstoma genome assembly, chromosome: 4.
LR215995.1:13243342-13243360
AGCTTTATTTTGTGGAGAGCATAACGCTAG13243342CGTGTCAAAGAATCTCATCTCGAATACGATTAAACTGGGCACAGCACCA
BNSCS3CT_UP_141_E06_10MAY2007_040 Brassica napus BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EV047881.1:400-418
CGAGGCTATAGTCTCAGAGATTGGGATCCA400GATGAGATTCTTTGACACGGTTTACTTTGGTGGGTTTTGTCAGACGAGC
BNSCS5CT_UP_120_D07_30MAY2007_057 Brassica napus BNSCS5CT Brassica napus cDNA 5', mRNA sequence.
EV086305.1:228-246
CGAGGCTATAGTCTCAGAGATTGGGATCCA228GATGAGATTCTTTGACACGGTTTACTTTGGTGGGTTTTGTCAGACGAGC
0120919 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV115607.1:746-764
CGAGGCTATAGTCTCAGAGATTGGGATCCA746GATGAGATTCTTTGACACGGTTTACTTTGGTGGGTTTTGTCAGACGAGC
0120927 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV115615.1:745-763
CGAGGCTATAGTCTCAGAGATTGGGATCCA745GATGAGATTCTTTGACACGGTTTACTTTGGTGGGTTTTGTCAGACGAGC
oeh81c09.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BZ010668.1:509-527
CGAGGCTATAGTCTCAGAGATTGGGATCCA509GATGAGATTCTTTGACACGGTTTACTTTGGTGGGTTTTGTCACACGAGC
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:24756663-24756681
CGAGGCTATAGTCTCAGAGATTGGGATCCA24756663GATGAGATTCTTTGACACGGTTTACTTTGGTGGGTTTTGTCAGACGAGC
Brassica napus genome assembly, chromosome: A03.
HG994357.1:24897458-24897476
CGAGGCTATAGTCTCAGAGATTGGGATCCA24897458GATGAGATTCTTTGACACGGTTTACTTTGGTGGGTTTTGTCAGACGAGC
Brassica napus genome assembly, chromosome: C07.
HG994371.1:48606138-48606156
CGAGGCTATAGTCTCAGAGATTGGGATCCA48606138GATGAGATTCTTTGACACGGTTTACTTTGGTGGGTTTTGTCAGACGAGC
Brassica rapa genome, scaffold: A03.
LR031572.1:24385113-24385131
CGAGGCTATAGTCTCAGAGATTGGGATCCA24385113GATGAGATTCTTTGACACGGTTTACTTTGGTGGGTTTTGTCAGACGAGC
Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:51371860-51371878
CGAGGCTATAGTCTCAGAGATTGGGATCCA51371860GATGAGATTCTTTGACACGGTTTACTTTGGTGGGTTTTGTCAGACGAGC
Raphanus sativus genome assembly, chromosome: 2.
LR778311.1:47986315-47986333
TGAGGCTATAGTCTCAGCGATTGGAATCCA47986315GATGAGATTCTTTGACACGGTTTATTTTGGTGGGTTTTGTCAGACGAGC
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:24512955-24512973
CGAGGCTATAGTCTCAGAGATTGGGATCCA24512955GATGAGATTCTTTGACACGGTTTACTTTGGTGGGTTTTGTCAGACGAGC
Cochlearia excelsa genome assembly, chromosome: 1.
OY748327.1:5342878-5342896
CAAGCCTTATATAACCGAAATCGGTATAAA5342878GATGAGATTCTTTGACACGGTTTACTTTGGTGGGTTTTGTCAAACGAGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CGTGTCAAAGAATCTCATC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CGTGTCAAAGAATCTCATC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.425 | 0.416 | search_plus_done; http://172.18.8.135:50400/match?q=CGTGTCAAAGAATCTCATC&k=0&no_gap=0&offset=0&limit=50
0.777 | 0.352 | search_minus_done; http://172.18.8.135:50400/match?q=GATGAGATTCTTTGACACG&k=0&no_gap=0&offset=0&limit=40
0.785 | 0.009 | cgi_end;

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